You can pay Income tax, TDS & various other taxes directly by following below link: https://onlineservices.tin.egov-nsdl.com/etaxnew/tdsnontds.jsp
You can pay GST by logging in to your account on GST Portal using the below link: https://services.gst.gov.in/services/login
You can check these details by going to tab View Company/LLP Master data under the tab MCA Services on home page of MCA21 website from the below link:
mca.gov.in